References:

1.     J. Cheng. DOMAC: An Accurate, Hybrid Protein Domain Prediction Server. Nucleic Acids Research, vol. 35, pp. w354-w356, 2007. [Open Access at NAR website] The preliminary implementation of DOMAC was ranked among the top servers in the seventh edition of Critical Assessment of Techniques for Protein Structure Prediction (CASP7), 2006.

2.     M. Tress, J. Cheng, P. Baldi, K. Joo, J. Lee, J.H. Seo, J. Lee, D. Baker, D. Chivian, D. Kim, A. Valencia, and I. Ezkurdia. Assessment of Predictions Submitted for the CASP7 Domain Prediction Category. Proteins: Structure, Function and Bioinformatics, CASP7 suppl.. In press, 2007. [Early view at Proteins website] (CASP7 Invited Paper)

3.     L. Larson, M. Zhang, N. Beliakova-Bethell, V. Bilanchone, A. Lamsa, K. Nagashima, R. Najdi, K. Kosaka, V. Kovacevic, A. Lamsa, J. Cheng, P. Baldi, G.W. Hatfield, and S. Sandmeyer. Ty3 Capsid Scanning Mutations Reveal Early and Late Functions of the Amino-Terminal Domain. Journal of Virology, vol. 81, pp. 6957-6972, 2007. [Free Access at Journal of Virology website] (Application of Domain Prediction in Biochemical Experiments)

4.     J. Cheng, M. Sweredoski, and P. Baldi. DOMpro: Protein Domain Prediction Using Profiles, Secondary Structure, Relative Solvent Accessibility, and Recursive Neural Networks. Data Mining and Knowledge Discovery, vol. 13, no. 1, pp. 1-10, 2006. [PDF]

Dr. Jianlin Cheng's Bioinformatics and Systems Biology Laboratory
Department of Computer Science
University of Missouri Columbia